Best Keto Bagels Recipe
If you’re searching for the Best Keto Bagels, your breakfast dreams are about to come true! These irresistible bagels are all about that chewy, golden crust and rich, satisfying bite—without the carb overload. Made with melty mozzarella, almond flour, and just the right seasoning, each bagel is perfectly tender and deeply comforting. Whether you’re craving a classic bagel with lox or something adventurous, these are everyone’s favorite low-carb way to bring that bakery-fresh flavor home.

Ingredients You’ll Need
Each ingredient in the Best Keto Bagels recipe serves an important purpose—bringing balance, flavor, and that unmistakable bagel chew. With just a few pantry staples and a handful of minutes, you’re on your way to a breakfast miracle.
- Mozzarella Cheese (2 cups, shredded): The secret to that perfect chew and mild flavor that lets your toppings shine.
- Cream Cheese (2 ounces): Blends seamlessly with mozzarella, adding creaminess and helping the bagels stay tender inside.
- Almond Flour (1 1/2 cups): A naturally gluten-free base that makes every bite light, nutty, and low-carb.
- Baking Powder (1 tablespoon): Lifts the dough, giving your bagels that signature rise and airy finish.
- Eggs (2 large, divided): One binds the dough, the other creates a glossy golden crust when brushed on top.
- Sesame Seeds or Everything Bagel Seasoning (1 tablespoon, optional): Finishing touch for crunch, flavor, and true bagel shop vibes!
How to Make Best Keto Bagels
Step 1: Preheat and Prepare
Start by turning your oven to 400°F and lining a baking sheet with parchment paper. Having everything prepped and ready means your bagels will go from mixing bowl to oven without a hitch. The high heat ensures a beautifully golden exterior with a delightfully chewy inside.
Step 2: Melt the Cheeses
In a large, microwave-safe bowl, mix the shredded mozzarella and cream cheese together. Microwave these in 30-second bursts, stirring after each round, until the mixture is completely melted and smooth. This gooey blend forms the delicious backbone of the Best Keto Bagels, giving them their unique texture.
Step 3: Mix the Dry Ingredients
In a separate bowl, whisk together the almond flour and baking powder. This step ensures that the baking powder is evenly distributed, so every bagel will puff up beautifully and taste just right.
Step 4: Combine and Knead
Add your dry mixture and one of the eggs right into the melted cheese bowl. Stir everything together (a silicone spatula is helpful here!), then knead by hand or spatula until you have a unified, smooth, slightly sticky dough. Don’t be afraid to get in there—the dough comes together quickly and easily!
Step 5: Shape the Bagels
Divide the dough into six equal pieces. Roll each piece into a log, then gently connect the ends to form a bagel ring. Place each ring on your prepared baking sheet. This is the moment each bagel gets its signature look, already smelling delicious as you work.
Step 6: Add Toppings and Bake
Beat the second egg and brush it over the tops of the bagels to create that glossy, bakery-style finish. Sprinkle with sesame seeds or everything bagel seasoning if you’d like a little extra crunch and a pop of flavor. Bake for 12 to 15 minutes—watch for that deep golden color and firm feel that means they’re ready to wow.
Step 7: Cool and Enjoy
Let the bagels cool for a few minutes before serving. This short pause helps them firm up and makes slicing and topping even easier. Your Best Keto Bagels are now ready to be devoured, warm and fresh!
How to Serve Best Keto Bagels

Garnishes
Make every bite beautiful by garnishing your bagels with a flurry of fresh herbs, flaky sea salt, or a pinch of extra seasoning. A sprinkle of chives or thinly sliced green onions makes for a vibrant and aromatic finish, especially delicious atop a smear of cream cheese.
Side Dishes
Pair your Best Keto Bagels with crisp cucumber slices, a colorful salad, or slices of smoked salmon for that classic deli feel. They’re also fantastic served with soft scrambled eggs, a tangy pickle, or a scoop of creamy Greek yogurt for a balanced, keto-friendly brunch spread.
Creative Ways to Present
Try slicing your bagels and layering them with avocado, turkey, or smoked salmon for hearty sandwiches. Toast and top with almond butter and berries for a sweet twist (omit savory toppings from the dough!). You can even cube leftover bagels and toast them for crunchy keto croutons to top salads or soups.
Make Ahead and Storage
Storing Leftovers
Best Keto Bagels are wonderful fresh, but don’t worry if you have extras—just store them in an airtight container in the fridge for up to five days. They’ll keep their lovely texture and are easy to refresh whenever you’re ready for another treat.
Freezing
To freeze, let the bagels cool completely, then wrap each one tightly in plastic wrap and pop them all into a freezer bag. They can be frozen for up to two months and thaw beautifully—making meal prep a breeze, even on your busiest days.
Reheating
For the best texture, simply slice a bagel and toast it before eating. You can also warm it in the oven at 350°F for a few minutes, straight from the fridge or after thawing. This brings back that just-baked aroma and perfect, crisp bite every time.
FAQs
Can I use coconut flour instead of almond flour?
While coconut flour is a popular low-carb choice, it absorbs much more liquid than almond flour, so a direct swap won’t work here. Stick with almond flour for the best authentic bagel texture in this recipe.
Is there a dairy-free option for Best Keto Bagels?
You can try dairy-free mozzarella and cream cheese substitutes, but the results may vary a bit in texture and flavor. Look for brands that melt well and are designed for baking for best results.
Why is my dough so sticky?
Keto bagel dough can be a little sticky because of the melted cheese. Lightly oil your hands or use a silicone spatula for kneading and shaping, and it should come together smoothly without being overly messy.
Can I add mix-ins like garlic or cinnamon?
Absolutely! For savory bagels, minced garlic or dried herbs are fantastic. For sweet bagels, skip the savory toppings and add a dash of cinnamon or a few sugar-free chocolate chips to the dough.
What’s the best way to toast these bagels?
Slice the bagels in half and toast them in a toaster or under a broiler until golden and crisp. They’ll develop an extra wonderful crunch and the flavors really come alive!
Final Thoughts
I honestly can’t wait for you to give these Best Keto Bagels a try—they’re endlessly customizable and always a crowd-pleaser, whether you’re hosting brunch or just elevating your daily breakfast. Every chewy bite is a reminder that eating keto doesn’t mean skimping on flavor or fun. Happy baking!
Print
Best Keto Bagels Recipe
- Total Time: 25 minutes
- Yield: 6 bagels 1x
- Diet: Vegetarian
Description
Enjoy these delicious Keto Bagels made with almond flour and cheese for a low-carb, gluten-free breakfast option. These bagels are easy to make and perfect for meal prep!
Ingredients
Dough:
- 2 cups shredded mozzarella cheese
- 2 ounces cream cheese
- 1 1/2 cups almond flour
- 1 tablespoon baking powder
- 1 large egg (for dough)
Topping:
- 1 large egg (for brushing)
- 1 tablespoon sesame seeds or everything bagel seasoning (optional)
Instructions
- Preheat the oven: Preheat the oven to 400°F and line a baking sheet with parchment paper.
- Melt the cheeses: In a microwave-safe bowl, combine the shredded mozzarella and cream cheese. Microwave in 30-second intervals, stirring in between, until melted and smooth.
- Mix the dough: In a separate bowl, mix the almond flour and baking powder. Add the dry ingredients and one egg to the melted cheese mixture. Stir well, then knead until a smooth dough forms.
- Shape the bagels: Divide the dough into 6 parts and shape each into a bagel. Place on the baking sheet.
- Brush and bake: Beat the second egg and brush it over the bagels. Sprinkle with sesame seeds or seasoning. Bake for 12–15 minutes until golden.
- Cool and serve: Let the bagels cool slightly before serving.
Notes
- Best when fresh but can be stored in the fridge for up to 5 days or frozen for up to 2 months.
- Toast before serving for best texture.
- Customize with cheese, garlic, or cinnamon for variations.
- Prep Time: 10 minutes
- Cook Time: 15 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 bagel
- Calories: 290
- Sugar: 1g
- Sodium: 330mg
- Fat: 23g
- Saturated Fat: 8g
- Unsaturated Fat: 13g
- Trans Fat: 0g
- Carbohydrates: 6g
- Fiber: 3g
- Protein: 14g
- Cholesterol: 55mg